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Structure paper

TitleMolecular Dynamics, Crystallography and Mutagenesis Studies on the Substrate Gating Mechanism of Prolyl Oligopeptidase.
Journal, issue, pagesBiochimie, Vol. 94, Page 1398-, Year 2012
Publish dateMar 14, 2012 (structure data deposition date)
AuthorsKaszuba, K. / Rog, T. / Danne, R. / Canning, P. / Fulop, V. / Juhasz, T. / Szeltner, Z. / St-Pierre, J.F. / Garcia-Horsman, A. / Mannisto, P.T. ...Kaszuba, K. / Rog, T. / Danne, R. / Canning, P. / Fulop, V. / Juhasz, T. / Szeltner, Z. / St-Pierre, J.F. / Garcia-Horsman, A. / Mannisto, P.T. / Karttunen, M. / Hokkanen, J. / Bunker, A.
External linksBiochimie / PubMed:22484394
MethodsX-ray diffraction
Resolution1.9 - 2.2 Å
Structure data

PDB-4amy:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND INHIBITOR IC-1
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4amz:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND INHIBITOR IC-2
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-4an0:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND INHIBITOR IC-3
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-4an1:
PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN WITH A COVALENTLY BOUND INHIBITOR IC-4
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

Chemicals

ChemComp-2P2:
1-[(2R,5S)-2-tert-butyl-5-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)pyrrolidin-1-yl]-4-phenylbutan-1-one

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-2P4:
(5R)-N-benzyl-5-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)cyclopent-1-ene-1-carboxamide

ChemComp-2P6:
(2S)-1-[1-(4-phenylbutanoyl)-L-prolyl]pyrrolidine-2-carbonitrile

ChemComp-2P8:
(2S)-N-benzyl-2-({(2S)-2-[(1R)-1,2-dihydroxyethyl]pyrrolidin-1-yl}carbonyl)pyrrolidine-1-carboxamide

Source
  • sus scrofa (pig)
KeywordsHYDROLASE / ALPHA-BETA-HYDROLASE / AMNESIA / BETA-PROPELLER / ALPHA/BETA-HYDROLASE

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