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Structure paper

TitleA carrier protein strategy yields the structure of dalbavancin.
Journal, issue, pagesJ. Am. Chem. Soc., Vol. 134, Page 4637-4645, Year 2012
Publish dateMay 5, 2011 (structure data deposition date)
AuthorsEconomou, N.J. / Nahoum, V. / Weeks, S.D. / Grasty, K.C. / Zentner, I.J. / Townsend, T.M. / Bhuiya, M.W. / Cocklin, S. / Loll, P.J.
External linksJ. Am. Chem. Soc. / PubMed:22352468
MethodsX-ray diffraction
Resolution1.4 - 2.5 Å
Structure data

PDB-3rul:
New strategy to analyze structures of glycopeptide-target complexes
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3rum:
New strategy to analyze structures of glycopeptide antibiotic-target complexes
Method: X-RAY DIFFRACTION / Resolution: 1.851 Å

PDB-3run:
New strategy to analyze structures of glycopeptide antibiotic-target complexes
Method: X-RAY DIFFRACTION / Resolution: 1.4 Å

Chemicals

ChemComp-TLA:
L(+)-TARTARIC ACID

ChemComp-CL:
Unknown entry

ChemComp-N1L:
2-amino-2-deoxy-beta-D-glucopyranuronic acid

ChemComp-MAN:
alpha-D-mannopyranose

ChemComp-M12:
10-METHYLUNDECANOIC ACID

ChemComp-HOH:
WATER

ChemComp-IPA:
ISOPROPYL ALCOHOL / alkaloid*YM

ChemComp-SO4:
SULFATE ION

ChemComp-RST:
3-amino-2,3,6-trideoxy-alpha-L-ribo-hexopyranose

ChemComp-MPD:
(4S)-2-METHYL-2,4-PENTANEDIOL / precipitant*YM

ChemComp-MRD:
(4R)-2-METHYLPENTANE-2,4-DIOL / precipitant*YM

ChemComp-PO4:
PHOSPHATE ION

ChemComp-TRS:
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL / pH buffer*YM

Source
  • homo sapiens (human)
  • escherichia coli k-12 (bacteria)
  • amycolatopsis lurida (bacteria)
  • enterobacteria phage t4 (virus)
  • streptomyces orientalis (bacteria)
KeywordsSignaling Protein/Antibiotic / antibiotic / glycopeptide / native protein ligation / fusion / carboxymethylation of cysteine / dalbavancin / Signaling Protein-Antibiotic complex / SUGAR BINDING PROTEIN/ANTIBIOTIC / ristocetin / SUGAR BINDING PROTEIN-ANTIBIOTIC complex / HYDROLASE/ANTIBIOTIC / vancomycin / HYDROLASE-ANTIBIOTIC complex

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