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Structure paper

TitleDistal heme pocket residues of B-type dye-decolorizing peroxidase: arginine but not aspartate is essential for peroxidase activity.
Journal, issue, pagesJ. Biol. Chem., Vol. 287, Page 10623-10630, Year 2012
Publish dateJan 7, 2012 (structure data deposition date)
AuthorsSingh, R. / Grigg, J.C. / Armstrong, Z. / Murphy, M.E. / Eltis, L.D.
External linksJ. Biol. Chem. / PubMed:22308037
MethodsX-ray diffraction
Resolution2.35 - 2.64 Å
Structure data

PDB-3vec:
Rhodococcus jostii RHA1 DypB D153A variant in complex with heme
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-3ved:
Rhodococcus jostii RHA1 DypB D153H variant in complex with heme
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3vee:
Rhodococcus jostii RHA1 DypB N246A variant in complex with heme
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3vef:
Rhodococcus jostii RHA1 DypB N246H variant in complex with heme
Method: X-RAY DIFFRACTION / Resolution: 2.64 Å

PDB-3veg:
Rhodococcus jostii RHA1 DypB R244L variant in complex with heme
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

Chemicals

ChemComp-HEM:
PROTOPORPHYRIN IX CONTAINING FE

ChemComp-CL:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-FMT:
FORMIC ACID

Source
  • rhodococcus jostii (bacteria)
KeywordsOXIDOREDUCTASE / peroxidase / lignan / Dyp

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