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Structure paper

TitleIdentification of the Elusive Hydronium Ion Exchanging Roles with a Proton in an Enzyme at Lower pH Values.
Journal, issue, pagesAngew. Chem. Int. Ed. Engl., Vol. 50, Page 7520-7523, Year 2011
Publish dateOct 20, 2009 (structure data deposition date)
AuthorsKovalevsky, A.Y. / Hanson, B.L. / Mason, S.A. / Yoshida, T. / Fisher, S.Z. / Mustyakimov, M. / Forsyth, V.T. / Blakeley, M.P. / Keen, D.A. / Langan, P.
External linksAngew. Chem. Int. Ed. Engl. / PubMed:21604345
MethodsX-ray diffraction / neutron diffraction
Resolution1.8 - 2 Å
Structure data

PDB-3kbj:
Room temperature X-ray structure of apo-D-Xylose Isomerase
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-3kcj:
Room temperature neutron structure of apo-D-Xylose Isomerase (refined jointly with X-ray structure 3KBJ)
Method: NEUTRON DIFFRACTION / X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3qys:
Room Temperature X-ray Structure of D-Xylose Isomerase in complex with 0.6Ni2+ cation bound in M2 metal binding site at pH=5.8
Method: X-RAY DIFFRACTION / Resolution: 1.85 Å

PDB-3qza:
Joint neutron and X-ray structure of apo-D-Xylose Isomerase at pH=5.9
Method: NEUTRON DIFFRACTION / X-RAY DIFFRACTION / Resolution: 2 Å

Chemicals

ChemComp-HOH:
WATER

ChemComp-DOD:
DEUTERATED WATER

ChemComp-NI:
NICKEL (II) ION

ChemComp-D8U:
Unknown entry

Source
  • streptomyces rubiginosus (bacteria)
KeywordsISOMERASE / apo-form / enzyme / sugar conversion / Carbohydrate metabolism / Metal-binding / Pentose shunt / Xylose metabolism / D-xylose isomerase / TIM barrel / sugar isomerase / xylose / cytosol / joint X-ray/neutron structure

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