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Structure paper

TitleStructure-based design of a new series of D-glutamic acid based inhibitors of bacterial UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase (MurD).
Journal, issue, pagesJ. Med. Chem., Vol. 54, Page 4600-4610, Year 2011
Publish dateJan 20, 2011 (structure data deposition date)
AuthorsTomasic, T. / Zidar, N. / Sink, R. / Kovac, A. / Blanot, D. / Contreras-Martel, C. / Dessen, A. / Muller-Premru, M. / Zega, A. / Gobec, S. ...Tomasic, T. / Zidar, N. / Sink, R. / Kovac, A. / Blanot, D. / Contreras-Martel, C. / Dessen, A. / Muller-Premru, M. / Zega, A. / Gobec, S. / Kikelj, D. / Masic, L.P.
External linksJ. Med. Chem. / PubMed:21591605
MethodsX-ray diffraction
Resolution1.49 Å
Structure data

PDB-2y68:
Structure-based design of a new series of D-glutamic acid-based inhibitors of bacterial MurD ligase
Method: X-RAY DIFFRACTION / Resolution: 1.49 Å

Chemicals

ChemComp-T04:
2-[[2-fluoro-5-[[[4-[(Z)-(4-oxo-2-sulfanylidene-1,3-thiazolidin-5-ylidene)methyl]phenyl]amino]methyl]phenyl]carbonylamino]pentanedioic acid

ChemComp-DMS:
DIMETHYL SULFOXIDE / DMSO, precipitant*YM

ChemComp-AZI:
AZIDE ION

ChemComp-SO4:
SULFATE ION

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

Source
  • escherichia coli k-12 (bacteria)
KeywordsLIGASE / ATP-BINDING / CELL CYCLE / CELL DIVISION / CELL SHAPE / CELL WALL / CELL WALL BIOGENESIS/DEGRADATION / NUCLEOTIDE-BINDING / PEPTIDOGLYCAN SYNTHESIS / UMA

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