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Structure paper

TitleMolecular Mechanisms for the RNA-Dependent ATPase Activity of Upf1 and its Regulation by Upf2.
Journal, issue, pagesMol. Cell, Vol. 41, Page 693-, Year 2011
Publish dateNov 26, 2010 (structure data deposition date)
AuthorsChakrabarti, S. / Jayachandran, U. / Bonneau, F. / Fiorini, F. / Basquin, C. / Domcke, S. / Le Hir, H. / Conti, E.
External linksMol. Cell / PubMed:21419344
MethodsX-ray diffraction
Resolution2.395 - 2.72 Å
Structure data

PDB-2xzl:
Upf1-RNA complex
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-2xzo:
Upf1 helicase - RNA complex
Method: X-RAY DIFFRACTION / Resolution: 2.395 Å

PDB-2xzp:
Upf1 helicase
Method: X-RAY DIFFRACTION / Resolution: 2.72 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-ALF:
TETRAFLUOROALUMINATE ION

ChemComp-MG:
Unknown entry

ChemComp-1PE:
PENTAETHYLENE GLYCOL / precipitant*YM

ChemComp-HOH:
WATER

ChemComp-GOL:
GLYCEROL

ChemComp-MLI:
MALONATE ION

Source
  • saccharomyces cerevisiae (brewer's yeast)
  • synthetic construct (others)
  • homo sapiens (human)
KeywordsHYDROLASE/RNA / HYDROLASE-RNA COMPLEX / NMD / RNA DEGRADATION / ALLOSTERIC REGULATION / HYDROLASE

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