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Structure paper

TitleTrinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 108, Page 1833-1838, Year 2011
Publish dateNov 24, 2010 (structure data deposition date)
AuthorsToyoshima, C. / Yonekura, S. / Tsueda, J. / Iwasawa, S.
External linksProc. Natl. Acad. Sci. USA / PubMed:21239683
MethodsX-ray diffraction
Resolution2.15 - 2.6 Å
Structure data

PDB-3ar2:
Calcium pump crystal structure with bound AMPPCP and Ca2+
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-3ar3:
Calcium pump crystal structure with bound ADP and TG
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

PDB-3ar4:
Calcium pump crystal structure with bound ATP and TG in the absence of Ca2+
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-3ar5:
Calcium pump crystal structure with bound TNP-AMP and TG
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-3ar6:
Calcium pump crystal structure with bound TNP-ADP and TG in the absence of calcium
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-3ar7:
Calcium pump crystal structure with bound TNP-ATP and TG in the absence of Ca2+
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

PDB-3ar8:
Calcium pump crystal structure with bound AlF4, TNP-AMP and TG
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-3ar9:
Calcium pump crystal structure with bound BeF3, TNP-AMP and TG in the absence of calcium
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

Chemicals

ChemComp-CA:
Unknown entry

ChemComp-ACP:
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER / AMP-PCP, energy-carrying molecule analogue*YM

ChemComp-NA:
Unknown entry

ChemComp-PC1:
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE / phospholipid*YM / Phosphatidylcholine

ChemComp-HOH:
WATER / Water

ChemComp-MG:
Unknown entry

ChemComp-TG1:
OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), / inhibitor*YM / Thapsigargin

ChemComp-PTY:
PHOSPHATIDYLETHANOLAMINE / phospholipid*YM / Phosphatidylethanolamine

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM / Adenosine diphosphate

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM / Adenosine triphosphate

ChemComp-TM1:
2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate)

ChemComp-12D:
2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate)

ChemComp-128:
SPIRO(2,4,6-TRINITROBENZENE[1,2A]-2O',3O'-METHYLENE-ADENINE-TRIPHOSPHATE

ChemComp-ALF:
TETRAFLUOROALUMINATE ION

ChemComp-BEF:
BERYLLIUM TRIFLUORIDE ION

Source
  • oryctolagus cuniculus (rabbit)
KeywordsHYDROLASE / P-type ATPase / Calcium Transport / Calcium Binding / ATP Binding / Endoplasmic Reticulum / sercoplasmic reticulum / HYDROLASE/HYDROLASE INHIBITOR / Hydrolase Calcium Transport / Calcium Binding ATP Binding / SARCOPLASMIC RETICULUM / HYDROLASE-HYDROLASE INHIBITOR complex

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