[English] 日本語
Yorodumi Papers
- Database of articles cited by EMDB/PDB/SASBDB data -

Search query

Structure methods

Structure paper

TitleStructural changes of envelope proteins during alphavirus fusion.
Journal, issue, pagesNature, Vol. 468, Issue 7324, Page 705-708, Year 2010
Publish dateDec 2, 2010
AuthorsLong Li / Joyce Jose / Ye Xiang / Richard J Kuhn / Michael G Rossmann
External linksPubMed:21124457 / Publisher's page
KeywordsVIRAL PROTEIN / Beta barrels / Ig-like folds / Animals / Cell Line / Cryoelectron Microscopy / Crystallography, X-Ray / Drosophila melanogaster / Endosomes / Hydrogen-Ion Concentration / Hydrophobic and Hydrophilic Interactions / Membrane Fusion / Membrane Glycoproteins / Models, Molecular / Protein Multimerization / Protein Structure, Quaternary / Protein Structure, Tertiary / Receptors, Virus / Sindbis Virus / Viral Envelope Proteins / Viral Fusion Proteins / Virion / Virus Internalization / glycoprotein E1, Sindbis virus / glycoprotein E2, Sindbis virus / VIRUS / icosahedral protein shell / icosahedral virus
MethodsX-ray diffraction / EM (single particle)
Resolution3.29 - 9 A
Structure data

Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH

Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus





  • sindbis virus

About Yorodumi Papers


Jul 12, 2017. Major update of PDB

Major update of PDB

  • wwPDB released updated PDB data conforming to the new PDBx/mmCIF dictionary. This is a major update changing the version number from 4 to 5, and with Remediation, in which all the entries are updated. See below links for details.
  • In this update, many items about electron microscopy experimental information are reorganized (e.g. em_software). Now, EM Navigator and Yorodumi are based on the updated data.

External links: wwPDB Remediation / Enriched Model Files Conforming to OneDep Data Standards Now Available in the PDB FTP Archive

Jun 16, 2017. Omokage search with filter

Omokage search with filter

  • Result of Omokage search can be filtered by keywords and the database types

Related info.: Omokage search

Sep 15, 2016. EM Navigator & Yorodumi renewed

EM Navigator & Yorodumi renewed

  • New versions of EM Navigator and Yorodumi started

Related info.: Changes in new EM Navigator and Yorodumi

Aug 31, 2016. New EM Navigator & Yorodumi

New EM Navigator & Yorodumi

  • In 15th Sep 2016, the development versions of EM Navigator and Yorodumi will replace the official versions.
  • Current version will continue as 'legacy version' for some time.

Related info.: Changes in new EM Navigator and Yorodumi / EM Navigator / Yorodumi

Apr 13, 2016. Omokage search got faster

Omokage search got faster

  • The computation time became ~1/2 compared to the previous version by re-optimization of data accession
  • Enjoy "shape similarity" of biomolecules, more!

Related info.: Omokage search

Read more

Yorodumi Papers

Database of articles cited by EMDB/PDB/SASBDB data

  • Database of articles cited by EMDB, PDB, and SASBDB entries
  • Using PubMed data

Related info.: EMDB / PDB / SASBDB / Yorodumi / EMN Papers / Changes in new EM Navigator and Yorodumi

Read more