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Structure paper

TitleGDP-bound and nucleotide-free intermediates of the guanine nucleotide exchange in the Rab5/Vps9 system
Journal, issue, pagesJ. Biol. Chem., Vol. 285, Page 36689-36697, Year 2010
Publish dateFeb 22, 2007 (structure data deposition date)
AuthorsUejima, T. / Ihara, K. / Goh, T. / Ito, E. / Sunada, M. / Ueda, T. / Nakano, A. / Wakatsuki, S.
External linksJ. Biol. Chem. / PubMed:20833725
MethodsX-ray diffraction
Resolution2.08 - 3 Å
Structure data

PDB-2efc:
Ara7-GDP/AtVps9a
Method: X-RAY DIFFRACTION / Resolution: 2.09 Å

PDB-2efd:
Ara7/AtVps9a
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-2efe:
Ara7-GDPNH2/AtVps9a
Method: X-RAY DIFFRACTION / Resolution: 2.08 Å

PDB-2efh:
Ara7-GDP/AtVps9a(D185N)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-GDP:
GUANOSINE-5'-DIPHOSPHATE / GDP, energy-carrying molecule*YM

ChemComp-HOH:
WATER

ChemComp-GNH:
AMINOPHOSPHONIC ACID-GUANYLATE ESTER

Source
  • arabidopsis thaliana (thale cress)
KeywordsTRANSPORT PROTEIN / GEF / GTPase / Vps9 / Rab5 / nucleotide

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