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TitleSynthesis and biological evaluation of fluorinated deoxynucleotide analogs based on bis-(difluoromethylene)triphosphoric acid.
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 107, Page 15693-15698, Year 2010
Publish dateJan 27, 2010 (structure data deposition date)
AuthorsSurya Prakash, G.K. / Zibinsky, M. / Upton, T.G. / Kashemirov, B.A. / McKenna, C.E. / Oertell, K. / Goodman, M.F. / Batra, V.K. / Pedersen, L.C. / Beard, W.A. ...Surya Prakash, G.K. / Zibinsky, M. / Upton, T.G. / Kashemirov, B.A. / McKenna, C.E. / Oertell, K. / Goodman, M.F. / Batra, V.K. / Pedersen, L.C. / Beard, W.A. / Shock, D.D. / Wilson, S.H. / Olah, G.A.
External linksProc. Natl. Acad. Sci. USA / PubMed:20724659
MethodsX-ray diffraction
Resolution2.5 Å
Structure data

PDB-3lk9:
DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

Chemicals

ChemComp-TFF:
5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidine

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-HOH:
WATER

Source
  • homo sapiens (human)
KeywordsLyase / Transferase/DNA / Nucleotidyl Transferase / DNA Polyemrase / DNA damage / DNA repair / DNA replication / DNA synthesis / DNA-binding / DNA-directed DNA polymerase / Magnesium / Metal-binding / Methylation / Nucleotidyltransferase / Nucleus / Transferase / Transferase-DNA complex

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