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Structure paper

TitleCatalytic mechanism of heparinase II investigated by site-directed mutagenesis and the crystal structure with its substrate.
Journal, issue, pagesJ. Biol. Chem., Vol. 285, Page 20051-20061, Year 2010
Publish dateAug 18, 2008 (structure data deposition date)
AuthorsShaya, D. / Zhao, W. / Garron, M.L. / Xiao, Z. / Cui, Q. / Zhang, Z. / Sulea, T. / Linhardt, R.J. / Cygler, M.
External linksJ. Biol. Chem. / PubMed:20404324
MethodsX-ray diffraction
Resolution2.1 - 2.35 Å
Structure data

PDB-3e7j:
HeparinaseII H202A/Y257A double mutant complexed with a heparan sulfate tetrasaccharide substrate
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3e80:
Structure of Heparinase II complexed with heparan sulfate degradation disaccharide product
Method: X-RAY DIFFRACTION / Resolution: 2.35 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-ACT:
ACETATE ION

ChemComp-HOH:
WATER

ChemComp-PO4:
PHOSPHATE ION

Source
  • pedobacter heparinus (bacteria)
KeywordsSUGAR BINDING PROTEIN / LYASE / alpha and beta lyase / alpha6/alpha6 incomplete toroid / alpha and beta lyase fold

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