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Structure paper

TitleBovine cytochrome c oxidase structures enable O2 reduction with minimization of reactive oxygens and provide a proton-pumping gate
Journal, issue, pagesProc. Natl. Acad. Sci. USA, Vol. 107, Page 7740-7745, Year 2010
Publish dateMar 19, 2010 (structure data deposition date)
AuthorsMuramoto, K. / Ohta, K. / Shinzawa-Itoh, K. / Kanda, K. / Taniguchi, M. / Nabekura, H. / Yamashita, E. / Tsukihara, T. / Yoshikawa, S.
External linksProc. Natl. Acad. Sci. USA / PubMed:20385840
MethodsX-ray diffraction
Resolution1.8 - 2.2 Å
Structure data

PDB-3ag1:
Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 280 K
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-3ag2:
Bovine Heart Cytochrome c Oxidase in the Carbon Monoxide-bound Fully Reduced State at 100 K
Method: X-RAY DIFFRACTION / Resolution: 1.802 Å

PDB-3ag3:
Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-bound Fully Reduced State at 100 K
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-3ag4:
Bovine Heart Cytochrome c Oxidase in the Cyanide Ion-bound Fully Reduced State at 100 K
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-8ijn:
Bovine Heart Cytochrome c Oxidase in the Nitric Oxide-Bound Fully Reduced State at 100 K
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

Chemicals

ChemComp-HEA:
HEME-A

ChemComp-CMO:
CARBON MONOXIDE

ChemComp-CU:
COPPER (II) ION

ChemComp-MG:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-TGL:
TRISTEAROYLGLYCEROL

ChemComp-PGV:
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE / phospholipid*YM

ChemComp-CUA:
DINUCLEAR COPPER ION

ChemComp-PSC:
(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE / phospholipid*YM

ChemComp-CHD:
CHOLIC ACID

ChemComp-UNX:
Unknown entry

ChemComp-CDL:
CARDIOLIPIN / phospholipid*YM

ChemComp-DMU:
DECYL-BETA-D-MALTOPYRANOSIDE / detergent*YM

ChemComp-ZN:
Unknown entry

ChemComp-PEK:
(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE / phospholipid*YM

ChemComp-HOH:
WATER

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-NO:
NITRIC OXIDE

ChemComp-CYN:
CYANIDE ION

Source
  • bos taurus (domestic cattle)
KeywordsOXIDOREDUCTASE / Copper / Electron transport / Formylation / Heme / Iron / Membrane / Mitochondrion / Mitochondrion inner membrane / Respiratory chain / Transmembrane / Transport / Acetylation / Transit peptide / Zinc / Isopeptide bond / Ubl conjugation / Membrane protein / Protein Complex / Respiratory Enzyme / Heme protein

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