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TitleMechanism of error-free and semitargeted mutagenic bypass of an aromatic amine lesion by Y-family polymerase Dpo4.
Journal, issue, pagesNat. Struct. Mol. Biol., Vol. 17, Page 379-388, Year 2010
Publish dateOct 30, 2009 (structure data deposition date)
AuthorsRechkoblit, O. / Kolbanovskiy, A. / Malinina, L. / Geacintov, N.E. / Broyde, S. / Patel, D.J.
External linksNat. Struct. Mol. Biol. / PubMed:20154704
MethodsX-ray diffraction
Resolution2.01 - 2.96 Å
Structure data

PDB-3khg:
Dpo4 extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion
Method: X-RAY DIFFRACTION / Resolution: 2.96 Å

PDB-3khh:
Dpo4 extension ternary complex with a C base opposite the 2-aminofluorene-guanine [AF]G lesion
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-3khl:
Dpo4 post-extension ternary complex with misinserted A opposite the 2-aminofluorene-guanine [AF]G lesion
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-3khr:
Dpo4 post-extension ternary complex with the correct C opposite the 2-aminofluorene-guanine [AF]G lesion
Method: X-RAY DIFFRACTION / Resolution: 2.01 Å

Chemicals

ChemComp-DGT:
2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE

ChemComp-CA:
Unknown entry

ChemComp-EPE:
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID / pH buffer*YM

ChemComp-AF:
2-AMINOFLUORENE

ChemComp-HOH:
WATER

ChemComp-TTP:
THYMIDINE-5'-TRIPHOSPHATE

Source
  • sulfolobus solfataricus p2 (archaea)
KeywordsTRANSFERASE/DNA / Lesion bypass / DNA polymerase / Y-family polymerase / 2-aminofluorene / semi-targeted mutagenesis / DNA DAMAGE / DNA REPAIR / DNA REPLICATION / DNA-BINDING / DNA-DIRECTED DNA POLYMERASE / MAGNESIUM / METAL-BINDING / MUTATOR PROTEIN / NUCLEOTIDYLTRANSFERASE / TRANSFERASE / TRANSFERASE-DNA COMPLEX

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