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Structure paper

TitleStructure and mechanism of a bacterial light-regulated cyclic nucleotide phosphodiesterase.
Journal, issue, pagesNature, Vol. 459, Page 1015-1018, Year 2009
Publish dateFeb 27, 2009 (structure data deposition date)
AuthorsBarends, T.R. / Hartmann, E. / Griese, J.J. / Beitlich, T. / Kirienko, N.V. / Ryjenkov, D.A. / Reinstein, J. / Shoeman, R.L. / Gomelsky, M. / Schlichting, I.
External linksNature / PubMed:19536266
MethodsX-ray diffraction
Resolution2.05 - 2.6 Å
Structure data

PDB-3gfx:
Klebsiella pneumoniae BlrP1 pH 4.5 calcium/cy-diGMP complex
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3gfy:
Klebsiella pneumoniae BlrP1 with FMN and cyclic diGMP, no metal ions
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-3gfz:
Klebsiella pneumoniae BlrP1 pH 6 manganese/cy-diGMP complex
Method: X-RAY DIFFRACTION / Resolution: 2.05 Å

PDB-3gg0:
Klebsiella pneumoniae BlrP1 pH 9.0 manganese/cy-diGMP complex
Method: X-RAY DIFFRACTION / Resolution: 2.55 Å

PDB-3gg1:
Klebsiella pneumoniae BlrP1 pH 8.0 calcium/cy-diGMP complex
Method: X-RAY DIFFRACTION / Resolution: 2.3 Å

Chemicals

ChemComp-FMN:
FLAVIN MONONUCLEOTIDE

ChemComp-C2E:
9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)

ChemComp-CA:
Unknown entry

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

Source
  • klebsiella pneumoniae subsp. pneumoniae mgh 78578 (bacteria)
KeywordsHYDROLASE / SIGNALING PROTEIN / TIM-barrel / BLUF-domain / EAL-domain / EAL domain / BLUF domain

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