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Structure paper

TitleMultistep Engineering of Pyrrolysyl-tRNA Synthetase to Genetically Encode N(varepsilon)-(o-Azidobenzyloxycarbonyl) lysine for Site-Specific Protein Modification
Journal, issue, pagesChem. Biol., Vol. 15, Page 1187-1197, Year 2008
Publish dateFeb 19, 2008 (structure data deposition date)
AuthorsYanagisawa, T. / Ishii, R. / Fukunaga, R. / Kobayashi, T. / Sakamoto, K. / Yokoyama, S.
External linksChem. Biol. / PubMed:19022179
MethodsX-ray diffraction
Resolution1.79 - 2.06 Å
Structure data

PDB-2zin:
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with BocLys and an ATP analogue
Method: X-RAY DIFFRACTION / Resolution: 1.79 Å

PDB-2zio:
Crystal structure of the catalytic domain of pyrrolysyl-tRNA synthetase in complex with AlocLys-AMP and PNP
Method: X-RAY DIFFRACTION / Resolution: 2.06 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-ANP:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP, energy-carrying molecule analogue*YM

ChemComp-LBY:
N~6~-(tert-butoxycarbonyl)-L-lysine

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-2PN:
IMIDODIPHOSPHORIC ACID

ChemComp-AYB:
5'-O-[(S)-({(2S)-2-amino-6-[(propoxycarbonyl)amino]hexanoyl}oxy)(hydroxy)phosphoryl]adenosine

Source
  • methanosarcina mazei (archaea)
KeywordsLIGASE / aminoacyl-tRNA synthetase / pyrrolysyl-tRNA synthetase / pyrrolysine / tRNA / ATP analogue / non-natural amino acid / unnatural amino acid / ATP-binding / Cytoplasm / Nucleotide-binding / Protein biosynthesis / Structural Genomics / NPPSFA / National Project on Protein Structural and Functional Analyses / RIKEN Structural Genomics/Proteomics Initiative / RSGI

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