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Structure paper

TitleInsights Into RNA Unwinding and ATP Hydrolysis by the Flavivirus Ns3 Protein.
Journal, issue, pagesEmbo J., Vol. 27, Page 3209-, Year 2008
Publish dateSep 15, 2008 (structure data deposition date)
AuthorsLuo, D. / Xu, T. / Watson, R.P. / Scherer-Becker, D. / Sampath, A. / Jahnke, W. / Yeong, S.S. / Wang, C.H. / Lim, S.P. / Strongin, A. ...Luo, D. / Xu, T. / Watson, R.P. / Scherer-Becker, D. / Sampath, A. / Jahnke, W. / Yeong, S.S. / Wang, C.H. / Lim, S.P. / Strongin, A. / Vasudevan, S.G. / Lescar, J.
External linksEmbo J. / PubMed:19008861
MethodsX-ray diffraction
Resolution1.67 - 2.6 Å
Structure data

PDB-2jlq:
Dengue virus 4 NS3 helicase structure, apo enzyme.
Method: X-RAY DIFFRACTION / Resolution: 1.67 Å

PDB-2jlr:
Dengue virus 4 NS3 helicase in complex with AMPPNP
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-2jls:
Dengue virus 4 NS3 helicase in complex with ADP
Method: X-RAY DIFFRACTION / Resolution: 2.23 Å

PDB-2jlu:
Dengue virus 4 NS3 helicase in complex with ssRNA
Method: X-RAY DIFFRACTION / Resolution: 2.04 Å

PDB-2jlv:
Dengue virus 4 NS3 helicase in complex with ssRNA and AMPPNP
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-2jlw:
Dengue virus 4 NS3 helicase in complex with ssRNA2
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-2jlx:
Dengue virus 4 NS3 helicase in complex with ssRNA and ADP-Vanadate
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

PDB-2jly:
Dengue virus 4 NS3 helicase in complex with ssRNA and ADP-Phosphate
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-2jlz:
Dengue virus 4 NS3 helicase in complex with ssRNA and ADP
Method: X-RAY DIFFRACTION / Resolution: 2.2 Å

Chemicals

ChemComp-CL:
Unknown entry

ChemComp-GOL:
GLYCEROL

ChemComp-HOH:
WATER

ChemComp-MN:
Unknown entry

ChemComp-ANP:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP, energy-carrying molecule analogue*YM

ChemComp-ADP:
ADENOSINE-5'-DIPHOSPHATE / ADP, energy-carrying molecule*YM

ChemComp-BME:
BETA-MERCAPTOETHANOL

ChemComp-PO4:
PHOSPHATE ION

ChemComp-VO4:
VANADATE ION

Source
  • dengue virus 4
KeywordsHYDROLASE / RIBONUCLEOPROTEIN / NUCLEOTIDE-BINDING / VIRAL NUCLEOPROTEIN / ENDOPLASMIC RETICULUM / HELICASE / PROTEASE / TRANSFERASE / CLEAVAGE ON PAIR OF BASIC RESIDUES / MULTIFUNCTIONAL ENZYME / TRANSCRIPTION REGULATION / NUCLEOTIDYLTRANSFERASE / NS3 HELICASE STRUCTURE / VIRION / ATPASE / NUCLEUS / MEMBRANE / SECRETED / ATP-BINDING / RNA-BINDING / FLAVIVIRUSES / GLYCOPROTEIN / RNA-DIRECTED RNA POLYMERASE / RNA REPLICATION / SERINE PROTEASE / ENVELOPE PROTEIN / DENGUE VIRUS / METAL-BINDING / TRANSMEMBRANE / TRANSCRIPTION / PHOSPHOPROTEIN / CAPSID PROTEIN / ATP ANALOG / ADP / HYDROLASE/RNA / HYDROLASE-RNA COMPLEX / SSRNA / HYDROLASE RNA COMPLEX / VANADATE / PHOSPHATE

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