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Structure paper

TitleStructures of DNA polymerase beta with active-site mismatches suggest a transient abasic site intermediate during misincorporation.
Journal, issue, pagesMol. Cell, Vol. 30, Page 315-324, Year 2008
Publish dateJan 25, 2008 (structure data deposition date)
AuthorsBatra, V.K. / Beard, W.A. / Shock, D.D. / Pedersen, L.C. / Wilson, S.H.
External linksMol. Cell / PubMed:18471977
MethodsX-ray diffraction
Resolution2.15 - 2.6 Å
Structure data

PDB-3c2k:
DNA POLYMERASE BETA with a gapped DNA substrate and DUMPNPP with Manganese in the active site
Method: X-RAY DIFFRACTION / Resolution: 2.4 Å

PDB-3c2l:
Ternary complex of DNA POLYMERASE BETA with a C:DAPCPP mismatch in the active site
Method: X-RAY DIFFRACTION / Resolution: 2.6 Å

PDB-3c2m:
Ternary complex of DNA POLYMERASE BETA with a G:dAPCPP mismatch in the active site
Method: X-RAY DIFFRACTION / Resolution: 2.15 Å

Chemicals

ChemComp-MN:
Unknown entry

ChemComp-NA:
Unknown entry

ChemComp-CL:
Unknown entry

ChemComp-DUP:
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE

ChemComp-HOH:
WATER

ChemComp-F2A:
2'-deoxy-5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]adenosine

ChemComp-EDO:
1,2-ETHANEDIOL

Source
  • homo sapiens (human)
KeywordsTRANSFERASE/DNA / Nucleotidyl Transferase / DNA Polymerase / Misincorporation / Manganese / DNA damage / DNA repair / DNA replication / DNA synthesis / DNA-binding / DNA-directed DNA polymerase / Lyase / Magnesium / Metal-binding / Nucleotidyltransferase / Nucleus / Polymorphism / Sodium / TRANSFERASE-DNA COMPLEX / TRANSFERASE / LYASE/DNA / LYASE-DNA COMPLEX

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