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Structure paper

TitleStructural insight into substrate binding and catalysis of a novel 2-keto-3-deoxy-D-arabinonate dehydratase illustrates common mechanistic features of the FAH superfamily.
Journal, issue, pagesJ. Mol. Biol., Vol. 379, Page 357-371, Year 2008
Publish dateMay 24, 2007 (structure data deposition date)
AuthorsBrouns, S.J. / Barends, T.R. / Worm, P. / Akerboom, J. / Turnbull, A.P. / Salmon, L. / van der Oost, J.
External linksJ. Mol. Biol. / PubMed:18448118
MethodsX-ray diffraction
Resolution2.1 - 3 Å
Structure data

PDB-2q18:
2-keto-3-deoxy-D-arabinonate dehydratase
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-2q19:
2-keto-3-deoxy-D-arabinonate dehydratase apo form
Method: X-RAY DIFFRACTION / Resolution: 3 Å

PDB-2q1a:
2-keto-3-deoxy-D-arabinonate dehydratase complexed with magnesium and 2-oxobutyrate
Method: X-RAY DIFFRACTION / Resolution: 2.5 Å

PDB-2q1c:
2-keto-3-deoxy-D-arabinonate dehydratase complexed with calcium and 2-oxobutyrate
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-2q1d:
2-keto-3-deoxy-D-arabinonate dehydratase complexed with magnesium and 2,5-dioxopentanoate
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

PDB-3bqb:
Hexagonal kristal form of 2-keto-3-deoxyarabinonate dehydratase
Method: X-RAY DIFFRACTION / Resolution: 2.7 Å

Chemicals

ChemComp-PO4:
PHOSPHATE ION

ChemComp-HOH:
WATER

ChemComp-MG:
Unknown entry

ChemComp-2KT:
2-KETOBUTYRIC ACID

ChemComp-CA:
Unknown entry

ChemComp-DO4:
2,5-DIOXOPENTANOIC ACID

Source
  • sulfolobus solfataricus (archaea)
KeywordsLYASE / FAH-family fold

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