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Structure paper

TitleStructure of pyrrolysyl-tRNA synthetase, an archaeal enzyme for genetic code innovation.
Journal, issue, pagesProc. Natl. Acad. Sci. Usa, Vol. 104, Page 11268-11273, Year 2007
Publish dateJun 6, 2007 (structure data deposition date)
AuthorsKavran, J.M. / Gundllapalli, S. / O'donoghue, P. / Englert, M. / Soll, D. / Steitz, T.A.
External linksProc. Natl. Acad. Sci. Usa / PubMed:17592110
MethodsX-ray diffraction
Resolution1.8 - 2.1 Å
Structure data

PDB-2q7e:
The structure of pyrrolysyl-tRNA synthetase bound to an ATP analogue
Method: X-RAY DIFFRACTION / Resolution: 1.8 Å

PDB-2q7g:
Pyrrolysine tRNA Synthetase bound to a pyrrolysine analogue (cyc) and ATP
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

PDB-2q7h:
Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-2zim:
Pyrrolysyl-tRNA synthetase bound to adenylated pyrrolysine and pyrophosphate
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

Chemicals

ChemComp-MG:
Unknown entry

ChemComp-ANP:
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER / AMP-PNP, energy-carrying molecule analogue*YM

ChemComp-EDO:
1,2-ETHANEDIOL

ChemComp-HOH:
WATER

ChemComp-ATP:
ADENOSINE-5'-TRIPHOSPHATE / ATP, energy-carrying molecule*YM

ChemComp-CCL:
N~6~-[(CYCLOPENTYLOXY)CARBONYL]-D-LYSINE

ChemComp-YLY:
(2R)-2-AMINO-6-({[(2S,3R)-3-METHYLPYRROLIDIN-2-YL]CARBONYL}AMINO)HEXANOYL [(2S,3R,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL HYDROGEN (R)-PHOSPHATE

ChemComp-POP:
PYROPHOSPHATE 2-

Source
  • methanosarcina mazei (archaea)
KeywordsLIGASE / aminoacyl-tRNA synthetase / pyrrolysine / pyrrolysyl-tRNA syntethetase / pyrrolysyl-tRNA synthetase / tRNA synthetase bound to an adenylated intermediate / ATP-binding / Nucleotide-binding / Protein biosynthesis

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