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TitleNuclear magnetic resonance structural studies and molecular modeling of duplex DNA containing normal and 4'-oxidized abasic sites.
Journal, issue, pagesBiochemistry, Vol. 46, Page 3096-3107, Year 2007
Publish dateJul 16, 2006 (structure data deposition date)
AuthorsChen, J. / Dupradeau, F.Y. / Case, D.A. / Turner, C.J. / Stubbe, J.
External linksBiochemistry / PubMed:17323932
MethodsNMR (solution)
Structure data

PDB-2hou:
Structure ensembles of duplex DNA containing a 4'-oxidized abasic site.
Method: SOLUTION NMR

PDB-2hpx:
13mer Duplex DNA containing a 4'-oxidized abasic site, averaged structure
Method: SOLUTION NMR

PDB-2hsk:
NMR Structure of 13mer Duplex DNA containing an abasic site (Y) in 5'-CCAAAGYACCGGG-3' (10 structures, alpha anomer)
Method: SOLUTION NMR

PDB-2hsl:
NMR structure of 13mer duplex DNA containing an abasic site, averaged structure (alpha anomer)
Method: SOLUTION NMR

PDB-2hsr:
13mer duplex DNA containing an abasic site with beta anomer
Method: SOLUTION NMR

PDB-2hss:
13mer duplex DNA containg an abasic site with beta anomer, averaged structure
Method: SOLUTION NMR

Source
  • synthetic construct (others)
KeywordsDNA / abasic site / DNA lesion / BER / bleomycin / DNA damage / molecular dynamics / Base excision repair / Ape1

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