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Structure paper

TitleInsights into the Sirtuin Mechanism from Ternary Complexes Containing NAD(+) and Acetylated Peptide.
Journal, issue, pagesStructure, Vol. 14, Page 1231-1240, Year 2006
Publish dateMay 24, 2006 (structure data deposition date)
AuthorsHoff, K.G. / Avalos, J.L. / Sens, K. / Wolberger, C.
External linksStructure / PubMed:16905097
MethodsX-ray diffraction
Resolution1.9 - 2.1 Å
Structure data

PDB-2h4f:
Sir2-p53 peptide-NAD+
Method: X-RAY DIFFRACTION / Resolution: 2 Å

PDB-2h4h:
Sir2 H116Y mutant-p53 peptide-NAD
Method: X-RAY DIFFRACTION / Resolution: 1.99 Å

PDB-2h4j:
Sir2-deacetylated peptide (from enzymatic turnover in crystal)
Method: X-RAY DIFFRACTION / Resolution: 2.1 Å

PDB-2h59:
Sir2 H116A-deacetylated p53 peptide-3'-o-acetyl ADP ribose
Method: X-RAY DIFFRACTION / Resolution: 1.9 Å

Chemicals

ChemComp-ZN:
Unknown entry

ChemComp-NAD:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE / NAD*YM

ChemComp-HOH:
WATER

ChemComp-NCA:
NICOTINAMIDE / medication*YM

ChemComp-OAD:
2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE

ChemComp-APR:
ADENOSINE-5-DIPHOSPHORIBOSE

ChemComp-3OD:
(2S,3S,4R,5S)-2-({[(S)-{[(S)-{[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY)PHOSPHORYL]OXY}METHYL)-4,5-DIHYDROXYTETRAHYDROFURAN-3-YL ACETATE

Source
  • thermotoga maritima (bacteria)
KeywordsHYDROLASE / Sir2 ternary complex / rossmann fold / Zn-binding domain / Zn binding domain

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