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Structure paper

TitleStructure of human CD1b with bound ligands at 2.3 A, a maze for alkyl chains.
Journal, issue, pagesNat. Immunol., Vol. 3, Page 721-726, Year 2002
Publish dateMay 24, 2002 (structure data deposition date)
AuthorsGadola, S.D. / Zaccai, N.R. / Harlos, K. / Shepherd, D. / Castro-Palomino, J.C. / Ritter, G. / Schmidt, R.R. / Jones, E.Y. / Cerundolo, V.
External linksNat. Immunol. / PubMed:12118248
MethodsX-ray diffraction
Resolution2.26 - 2.8 Å
Structure data

PDB-1gzp:
CD1b in complex with GM2 ganglioside
Method: X-RAY DIFFRACTION / Resolution: 2.8 Å

PDB-1gzq:
CD1b in complex with Phophatidylinositol
Method: X-RAY DIFFRACTION / Resolution: 2.26 Å

Chemicals

ChemComp-GM2:
N-[(1S,2S)-2-HYDROXY-1-({[(2R,3R,4S,5S,6R)-3,4,5-TRIHYDROXY-6-(HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL]OXY}METHYL)OCTADECYL]OCTADECANAMIDE

ChemComp-D12:
DODECANE

ChemComp-TWT:
DOCOSANE

ChemComp-HOH:
WATER

ChemComp-PII:
2-[(HYDROXY{[(2R,3R,5S,6R)-2,3,4,5,6-PENTAHYDROXYCYCLOHEXYL]OXY}PHOSPHORYL)OXY]-1-[(PALMITOYLOXY)METHYL]ETHYL HEPTADECANOATE

ChemComp-NO3:
NITRATE ION

Source
  • homo sapiens (human)
KeywordsGLYCOPROTEIN / LIPID / GANGLIOSIDE / MHC / ANTIGEN PRESENTATION / PHOPHATIDYLINOSITOL

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