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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | Cryo-EM structure of hnRAC1-2I8I fibril. | |||||||||
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![]() | irreversible fibril / PROTEIN FIBRIL | |||||||||
Biological species | ![]() | |||||||||
Method | helical reconstruction / cryo EM / Resolution: 3.75 Å | |||||||||
![]() | Li DN / Ma YY / Li D / Dai B / Liu C | |||||||||
Funding support | 1 items
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![]() | ![]() Title: Cryo-EM structure of hnRAC1-2I8I fibril. Authors: Li DN / Ma YY / Li D / Dai B / Liu C | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 24.1 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 12 KB 12 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 14.8 KB | Display | ![]() |
Images | ![]() | 59.7 KB | ||
Filedesc metadata | ![]() | 4.1 KB | ||
Others | ![]() ![]() | 218.5 MB 218.5 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 885.5 KB | Display | ![]() |
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Full document | ![]() | 885.1 KB | Display | |
Data in XML | ![]() | 22.6 KB | Display | |
Data in CIF | ![]() | 29.6 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
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Links
EMDB pages | ![]() ![]() |
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Map
File | ![]() | ||||||||||||||||||||
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Voxel size | X=Y=Z: 0.83 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #2
File | emd_35520_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #1
File | emd_35520_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Cryo-EM structure of hnRAC1-2I8I fibril.
Entire | Name: Cryo-EM structure of hnRAC1-2I8I fibril. |
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Components |
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-Supramolecule #1: Cryo-EM structure of hnRAC1-2I8I fibril.
Supramolecule | Name: Cryo-EM structure of hnRAC1-2I8I fibril. / type: complex / ID: 1 / Parent: 0 / Macromolecule list: all |
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Source (natural) | Organism: ![]() |
-Macromolecule #1: GLY-PHI-GLY-GLY-ASN-ASP-ASN-PHI-GLY
Macromolecule | Name: GLY-PHI-GLY-GLY-ASN-ASP-ASN-PHI-GLY / type: protein_or_peptide / ID: 1 / Number of copies: 16 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() |
Molecular weight | Theoretical: 1.135657 KDa |
Sequence | String: G(PHI)GGNDN(PHI)G |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | helical reconstruction |
Aggregation state | filament |
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Sample preparation
Buffer | pH: 7 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 55.0 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 1.0 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |