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Open data
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Basic information
Entry | ![]() | ||||||||||||
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Title | X-31 hemagglutinin in complex with FL-1061 Fab | ||||||||||||
![]() | half map 1 | ||||||||||||
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![]() | influenza / fusogen / antibody / VIRAL PROTEIN | ||||||||||||
Function / homology | ![]() viral budding from plasma membrane / clathrin-dependent endocytosis of virus by host cell / host cell surface receptor binding / apical plasma membrane / fusion of virus membrane with host plasma membrane / fusion of virus membrane with host endosome membrane / viral envelope / virion attachment to host cell / host cell plasma membrane / virion membrane Similarity search - Function | ||||||||||||
Biological species | ![]() ![]() ![]() ![]() | ||||||||||||
Method | single particle reconstruction / cryo EM / Resolution: 3.3 Å | ||||||||||||
![]() | Windsor IW / Thornlow D / Schmidt AG | ||||||||||||
Funding support | ![]()
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![]() | ![]() Title: Antibodies elicited by a hyperglycoslated immunogen Authors: Windsor IW / Schmidt AG | ||||||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 166.3 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 16.8 KB 16.8 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 12.8 KB | Display | ![]() |
Images | ![]() | 116.9 KB | ||
Filedesc metadata | ![]() | 6.2 KB | ||
Others | ![]() ![]() | 140.8 MB 140.8 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Validation report
Summary document | ![]() | 1007.6 KB | Display | ![]() |
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Full document | ![]() | 1007.2 KB | Display | |
Data in XML | ![]() | 20 KB | Display | |
Data in CIF | ![]() | 26.5 KB | Display | |
Arichive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8g5aMC M: atomic model generated by this map C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
File | ![]() | ||||||||||||||||||||
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Annotation | half map 1 | ||||||||||||||||||||
Voxel size | X=Y=Z: 0.825 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: X-31 Hemagglutinin full length soluble ectodomain trimer in...
File | emd_29737_half_map_1.map | ||||||||||||
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Annotation | X-31 Hemagglutinin full length soluble ectodomain trimer in complex with three FL-1061 Fabs | ||||||||||||
Projections & Slices |
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Density Histograms |
-Half map: half map 2
File | emd_29737_half_map_2.map | ||||||||||||
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Annotation | half map 2 | ||||||||||||
Projections & Slices |
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Density Histograms |
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Sample components
-Entire : X-31 hemagglutinin in complex with FL-1061 Fabs
Entire | Name: X-31 hemagglutinin in complex with FL-1061 Fabs |
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Components |
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-Supramolecule #1: X-31 hemagglutinin in complex with FL-1061 Fabs
Supramolecule | Name: X-31 hemagglutinin in complex with FL-1061 Fabs / type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1-#3 |
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Source (natural) | Organism: ![]() ![]() |
-Macromolecule #1: Hemagglutinin
Macromolecule | Name: Hemagglutinin / type: protein_or_peptide / ID: 1 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 70.408609 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: MKRGLCCVLL LCGAVFVSPS ASQDLPGNDN STATLCLGHH AVPNGTLVKT ITDDQIEVTN ATELVQSSST GKICNNPHRI LDGIDCTLI DALLGDPHCD VFQNETWDLF VERSKAFSNC YPYDVPDYAS LRSLVASSGT LEFITEGFTW TGVTQNGGSN A CKRGPGSG ...String: MKRGLCCVLL LCGAVFVSPS ASQDLPGNDN STATLCLGHH AVPNGTLVKT ITDDQIEVTN ATELVQSSST GKICNNPHRI LDGIDCTLI DALLGDPHCD VFQNETWDLF VERSKAFSNC YPYDVPDYAS LRSLVASSGT LEFITEGFTW TGVTQNGGSN A CKRGPGSG FFSRLNWLTK SGSTYPVLNV TMPNNDNFDK LYIWGIHHPS TDQEQTSLYV QASGRVTVST RRSQQTIIPN IG SRPWVRG LSSRISIYWT IVKPGDVLVI NSNGNLIAPR GYFKMRTGKS SIMRSDAPID TCISECITPN GSIPNDKPFQ NVN KITYGA CPKYVKQNTL KLATGMRNVP EKQTRGLFGA IAGFIENGWE GMIDGWYGFR HQNSEGTGQA ADLKSTQAAI DQIN GKLNR VIEKTNEKFH QIEKEFSEVE GRIQDLEKYV EDTKIDLWSY NAELLVALEN QHTIDLTDSE MNKLFEKTRR QLREN AEDM GNGCFKIYHK CDNACIESIR NGTYDHDVYR DEALNNRFQI KGVELKSGAG SSLEVLFQGP GSGSSLGGSG YIPEAP RDG QAYVRKDGEW VLLSTFLGSG SSHHHHHHHH GGSGSSMDEK TTGWRGGHVV EGLAGELEQL RARLEHHPQG QREP UniProtKB: Hemagglutinin |
-Macromolecule #2: FL-1086 Fab heavy chain
Macromolecule | Name: FL-1086 Fab heavy chain / type: protein_or_peptide / ID: 2 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 26.019004 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: ASQVQLQQSG AELMQPGASV KLSCKATGYT FAGYWIEWVK QRPGHGLEWI GEILPGIGST NYNGKFKGKA TFTADSSSNT AYMELSSLT TEDSAIYYCA RSGAQATFAM DYWGQGTSVT VSGASTKGPS VFPLAPSSKS TSGGTAALGC LVKDYFPEPV T VSWNSGAL ...String: ASQVQLQQSG AELMQPGASV KLSCKATGYT FAGYWIEWVK QRPGHGLEWI GEILPGIGST NYNGKFKGKA TFTADSSSNT AYMELSSLT TEDSAIYYCA RSGAQATFAM DYWGQGTSVT VSGASTKGPS VFPLAPSSKS TSGGTAALGC LVKDYFPEPV T VSWNSGAL TSGVHTFPAV LQSSGLYSLS SVVTVPSSSL GTQTYICNVN HKPSNTKVDK RVEPKSCDKG SSLEVLFQGP LG HHHHHH |
-Macromolecule #3: FL-1086 light chain
Macromolecule | Name: FL-1086 light chain / type: protein_or_peptide / ID: 3 / Number of copies: 3 / Enantiomer: LEVO |
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Source (natural) | Organism: ![]() ![]() |
Molecular weight | Theoretical: 23.693311 KDa |
Recombinant expression | Organism: ![]() |
Sequence | String: ASDVQMTQSP SYLAASPGET ITINCRASKS ISKFLAWYQE KPGKTNKLLI YSGSTLQSGI PSRFSGSGSG TDFTLTISSL EPEDFAMYY CQQHNEYPYT FGAGTKLELK RTVAAPSVFI FPPSDEQLKS GTASVVCLLN NFYPREAKVQ WKVDNALQSG N SQESVTEQ ...String: ASDVQMTQSP SYLAASPGET ITINCRASKS ISKFLAWYQE KPGKTNKLLI YSGSTLQSGI PSRFSGSGSG TDFTLTISSL EPEDFAMYY CQQHNEYPYT FGAGTKLELK RTVAAPSVFI FPPSDEQLKS GTASVVCLLN NFYPREAKVQ WKVDNALQSG N SQESVTEQ DSKDSTYSLS STLTLSKADY EKHKVYACEV THQGLSSPVT KSFNRGEC |
-Macromolecule #4: 2-acetamido-2-deoxy-beta-D-glucopyranose
Macromolecule | Name: 2-acetamido-2-deoxy-beta-D-glucopyranose / type: ligand / ID: 4 / Number of copies: 12 / Formula: NAG |
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Molecular weight | Theoretical: 221.208 Da |
Chemical component information | ![]() ChemComp-NAG: |
-Experimental details
-Structure determination
Method | cryo EM |
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![]() | single particle reconstruction |
Aggregation state | particle |
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Sample preparation
Buffer | pH: 7.5 |
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Grid | Model: C-flat-1.2/1.3 / Material: COPPER / Mesh: 400 / Pretreatment - Type: GLOW DISCHARGE |
Vitrification | Cryogen name: ETHANE / Instrument: GATAN CRYOPLUNGE 3 |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Image recording | Film or detector model: GATAN K3 BIOQUANTUM (6k x 4k) / Average electron dose: 1.2 e/Å2 |
Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD / Nominal defocus max: 2.0 µm / Nominal defocus min: 0.6 µm |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |