|
eF-site ID
|
1x9m-B |
PDB Code
|
1x9m |
Chain
|
B |
|
click to enlarge
|
|
Title
|
T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNA |
Classification
|
TRANSFERASE/ELECTRON TRANSPORT/DNA |
Compound
|
5'-D(*GP*GP*AP*GP*AP*GP*TP*GP*AP*TP*TP*GP*GP*TP*AP*GP*TP*GP*TP*GP*AP*(2DT))-3' |
Source
|
Enterobacteria phage T7 (Bacteriophage T7) (1X9M) |
|
Sequence
|
B: |
KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPIL
DEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFK
NGEVAATKVGALSKGQLKEFLDANL
|
|
Description
|
|
Functional site
|
|
1)
|
chain |
B |
residue |
24-42 |
type |
prosite |
sequence |
LVDFWAEWCGPCKMIAPIL
|
description |
THIOREDOXIN_1 Thioredoxin family active site. LVdFWaeWCGPCKmIapiL
|
source |
prosite : PS00194
|
|
2)
|
chain |
B |
residue |
33 |
type |
ACT_SITE |
sequence |
G
|
description |
Nucleophile
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
3)
|
chain |
B |
residue |
36 |
type |
ACT_SITE |
sequence |
K
|
description |
Nucleophile
|
source |
Swiss-Prot : SWS_FT_FI1
|
|
4)
|
chain |
B |
residue |
27 |
type |
SITE |
sequence |
F
|
description |
Deprotonates C-terminal active site Cys
|
source |
Swiss-Prot : SWS_FT_FI2
|
|
5)
|
chain |
B |
residue |
34 |
type |
SITE |
sequence |
P
|
description |
Contributes to redox potential value
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
6)
|
chain |
B |
residue |
35 |
type |
SITE |
sequence |
C
|
description |
Contributes to redox potential value
|
source |
Swiss-Prot : SWS_FT_FI3
|
|
7)
|
chain |
B |
residue |
70 |
type |
MOD_RES |
sequence |
Y
|
description |
N6-acetyllysine => ECO:0000269|PubMed:18723842
|
source |
Swiss-Prot : SWS_FT_FI4
|
|
|
|