Pairwise fitting pdb-4v5m on pdb-4v70 by gmfit



Pairwise fitting of target pdb-4v5m on reference pdb-4v70 by gmfit(PID:4108108).

RANK[1] Corr.Coeff:0.946 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(pdb-4v70)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.946 0.825 0.803 0.781 0.769 0.766 0.764 0.756 0.753 0.749

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v70"(PDB-format) or "4v70"(mmCIF-format), and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.736811,-0.166240,0.655343 136.158276 center 0,0,0 model #1
    move 179.539762,176.756914,189.581403 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v70)] [Download the target GMM(pdb 4v5m)] [Download gmfit result file(4108108)]