Pairwise fitting pdb-4v5m on pdb-4v6l by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-4v6l by gmfit(PID:4125090).





RANK[1] Corr.Coeff:0.929

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-4v6l)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
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Corr.Coeff.
0.929
0.810
0.794
0.765
0.763
0.760
0.754
0.752
0.751
0.734







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6l"(PDB-format) or 
 "4v6l"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.616247,-0.660491,0.428942 7.129808 center 0,0,0 model #1
move -2.390347,0.693698,0.672312 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v6l)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4125090)]