Pairwise fitting pdb-4v5m on pdb-4v6k by gmfit










Pairwise fitting of target pdb-4v5m on reference pdb-4v6k by gmfit(PID:4099685).





RANK[1] Corr.Coeff:0.925

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(pdb-4v6k)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.925
0.805
0.799
0.778
0.778
0.769
0.756
0.753
0.749
0.728







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "4v6k"(PDB-format) or 
 "4v6k"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.561877,-0.637418,0.527250 8.029000 center 0,0,0 model #1
move -2.793403,0.501931,-0.095258 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 4v6k)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4099685)]