Pairwise fitting pdb-4v5m on pdb-4v6k by gmfit



Pairwise fitting of target pdb-4v5m on reference pdb-4v6k by gmfit(PID:4099685).

RANK[1] Corr.Coeff:0.925 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(pdb-4v6k)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.925 0.805 0.799 0.778 0.778 0.769 0.756 0.753 0.749 0.728

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v6k"(PDB-format) or "4v6k"(mmCIF-format), and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.561877,-0.637418,0.527250 8.029000 center 0,0,0 model #1
    move -2.793403,0.501931,-0.095258 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v6k)] [Download the target GMM(pdb 4v5m)] [Download gmfit result file(4099685)]