Pairwise fitting pdb-4v5m on emdb-6397 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-6397 by gmfit(PID:188689).





RANK[1] Corr.Coeff:0.826

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-6397)

display:



color:


The structure of BipA in GTP form bound to the ratcheted ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.826
0.818
0.767
0.746
0.744
0.744
0.736
0.728
0.723
0.709







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_6397.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.723500,-0.654416,0.219745 179.646805 center 0,0,0 model #1
move 228.280979,233.925010,230.746019 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!