Pairwise fitting pdb-4v5m on emdb-5784 by gmfit



Pairwise fitting of target pdb-4v5m on reference emdb-5784 by gmfit(PID:4149502).

RANK[1] Corr.Coeff:0.916 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(emdb-5784)
display:
color:
EttA-bound E. coli 70S ribosome complex containing P-site tRNA and A-site tRNA [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.916 0.796 0.784 0.745 0.736 0.722 0.719 0.712 0.711 0.709

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_5784.map.gz", and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.656607,-0.547410,0.518854 7.826275 center 0,0,0 model #1
    move 3.595333,-2.805316,-3.382561 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 5784)] [Download the target GMM(pdb 4v5m)] [Download gmfit result file(4149502)]