Pairwise fitting pdb-4v5m on emdb-5030 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-5030 by gmfit(PID:298414).





RANK[1] Corr.Coeff:0.910

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-5030)

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GTPase activation of elongation factor EF-Tu by the ribosome during decoding: a cryo-EM structure of the  Thermus thermophilus ribosome in which the ternary complex of EF-Tu, tRNA and guanine nucleotide has been trapped on the ribosome with the antibiotic kirromycin. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.910
0.771
0.768
0.764
0.724
0.721
0.705
0.703
0.699
0.689







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_5030.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.633927,-0.682236,0.364268 8.877516 center 0,0,0 model #1
move -0.714426,-4.276263,-0.923313 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!