Pairwise fitting pdb-4v5m on emdb-2695 by gmfit



Pairwise fitting of target pdb-4v5m on reference emdb-2695 by gmfit(PID:4125043).

RANK[1] Corr.Coeff:0.826 [JSmol] [Molmil]
TARGET(pdb-4v5m)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v5m)]
REFERENCE(emdb-2695)
display:
color:
Cryo-EM map of Trigger Factor bound to a translating ribosome [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.826 0.804 0.775 0.755 0.739 0.730 0.730 0.724 0.718 0.712

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2695.map.gz", and read it.
  2. Download the Target molecule "4v5m"(PDB-format) or "4v5m"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.038043,-0.053564,0.997839 143.551385 center 0,0,0 model #1
    move 2.161865,-0.233041,-1.207363 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2695)] [Download the target GMM(pdb 4v5m)] [Download gmfit result file(4125043)]