Pairwise fitting pdb-4v5m on emdb-2695 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-2695 by gmfit(PID:4125043).





RANK[1] Corr.Coeff:0.826

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-2695)

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Cryo-EM map of Trigger Factor bound to a translating ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.826
0.804
0.775
0.755
0.739
0.730
0.730
0.724
0.718
0.712







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2695.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.038043,-0.053564,0.997839 143.551385 center 0,0,0 model #1
move 2.161865,-0.233041,-1.207363 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 2695)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(4125043)]