Pairwise fitting pdb-4v5m on emdb-2446 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-2446 by gmfit(PID:139624).





RANK[1] Corr.Coeff:0.918

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-2446)

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Visualization of a polytopic membrane protein egressing from the SecY complex - Electron cryo-microscopy of an tightly coupled RNC-SecY complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.918
0.775
0.772
0.758
0.706
0.694
0.693
0.691
0.690
0.685







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2446.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.725533,-0.636055,0.262749 11.639896 center 0,0,0 model #1
move 0.611093,0.289529,0.335826 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!