Pairwise fitting pdb-4v5m on emdb-1917 by gmfit










Pairwise fitting of target pdb-4v5m on reference emdb-1917 by gmfit(PID:1384523).





RANK[1] Corr.Coeff:0.928

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v5m)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v5m)]







REFERENCE(emdb-1917)

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Intermediate binding positions of RRF and EF-G on the post-termination complex [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.928
0.795
0.789
0.772
0.750
0.722
0.719
0.719
0.714
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1917.map.gz", and read it.

  2.  Download the Target molecule "4v5m"(PDB-format) or
  "4v5m"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.508355,-0.726941,0.461663 12.562455 center 0,0,0 model #1
move 182.247135,179.598987,176.510069 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1917)]

[Download the target GMM(pdb 4v5m)]

[Download gmfit result file(1384523)]