Pairwise fitting pdb-4v4v on pdb-4v6n by gmfit



Pairwise fitting of target pdb-4v4v on reference pdb-4v6n by gmfit(PID:4112727).

RANK[1] Corr.Coeff:0.937 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(pdb-4v6n)
display:
color:
[Ngauss:20]
[Download the reference pdb]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.937 0.758 0.754 0.740 0.739 0.733 0.721 0.716 0.715 0.714

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference molecule "4v6n"(PDB-format) or "4v6n"(mmCIF-format), and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.503925,-0.824134,-0.258577 1.649738 center 0,0,0 model #1
    move 10.074435,2.337127,2.188293 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(pdb 4v6n)] [Download the target GMM(pdb 4v4v)] [Download gmfit result file(4112727)]