Pairwise fitting pdb-4v4v on pdb-3j9y by gmfit










Pairwise fitting of target pdb-4v4v on reference pdb-3j9y by gmfit(PID:4057869).





RANK[1] Corr.Coeff:0.913

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(pdb-3j9y)

display:



color:


 [Ngauss:20]



[Download the reference pdb]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.913
0.773
0.766
0.763
0.753
0.747
0.744
0.743
0.742
0.734







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference molecule "3j9y"(PDB-format) or 
 "3j9y"(mmCIF-format), and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.695638,0.718154,-0.018518 175.350698 center 0,0,0 model #1
move 195.888081,195.125771,187.006532 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(pdb 3j9y)]

[Download the target GMM(pdb 4v4v)]

[Download gmfit result file(4057869)]