Pairwise fitting pdb-4v4v on emdb-2172 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-2172 by gmfit(PID:319827).





RANK[1] Corr.Coeff:0.304

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-2172)

display:



color:


Methanococcus igneus 70S ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.304
0.262
0.256
0.243
0.220
0.206
0.201
0.197
0.191
0.190







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_2172.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.065739,0.648039,-0.758765 80.579816 center 0,0,0 model #1
move -20.742175,89.474644,25.113652 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!