Pairwise fitting pdb-4v4v on emdb-1565 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1565 by gmfit(PID:4088992).





RANK[1] Corr.Coeff:0.911

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1565)

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Recognition of Phe-tRNAPhe, Trp-tRNATrp and  : a common molecular mechanism for aminoacyl-tRNA selection revealed by cryo-EM [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.911
0.760
0.752
0.750
0.747
0.742
0.724
0.717
0.710
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1565.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.401528,-0.887185,0.227326 2.231736 center 0,0,0 model #1
move 14.130994,1.315477,4.199817 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1565)]

[Download the target GMM(pdb 4v4v)]

[Download gmfit result file(4088992)]