Pairwise fitting pdb-4v4v on emdb-1553 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1553 by gmfit(PID:410783).





RANK[1] Corr.Coeff:0.882

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1553)

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Pretranslocation ribosome. Group after ML3D classification. Racheted ribosome with tRNAs in hybrid positions. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.882
0.751
0.737
0.724
0.719
0.713
0.713
0.713
0.702
0.698







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1553.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.698083,0.715816,-0.016993 177.947613 center 0,0,0 model #1
move 1.341792,12.021908,-4.055236 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!