Pairwise fitting pdb-4v4v on emdb-1551 by gmfit



Pairwise fitting of target pdb-4v4v on reference emdb-1551 by gmfit(PID:4088669).

RANK[1] Corr.Coeff:0.866 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(emdb-1551)
display:
color:
Pretranslocation ribosome. Total population. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.866 0.698 0.698 0.687 0.684 0.683 0.682 0.681 0.676 0.652

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1551.map.gz", and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.703135,0.711032,-0.005944 176.653235 center 0,0,0 model #1
    move 2.341035,14.009092,-4.727175 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1551)] [Download the target GMM(pdb 4v4v)] [Download gmfit result file(4088669)]