Pairwise fitting pdb-4v4v on emdb-1551 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1551 by gmfit(PID:4160284).





RANK[1] Corr.Coeff:0.866

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1551)

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color:


Pretranslocation ribosome. Total population. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.866
0.698
0.698
0.687
0.684
0.683
0.682
0.681
0.676
0.652







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1551.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.703135,0.711032,-0.005944 176.653235 center 0,0,0 model #1
move 2.341035,14.009092,-4.727175 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1551)]

[Download the target GMM(pdb 4v4v)]

[Download gmfit result file(4160284)]