Pairwise fitting pdb-4v4v on emdb-1541 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1541 by gmfit(PID:303117).





RANK[1] Corr.Coeff:0.896

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1541)

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Visualization of the hybrid state of tRNA binding promoted by spontaneous ratcheting of the ribosome [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.896
0.867
0.756
0.754
0.752
0.744
0.731
0.720
0.709
0.707







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1541.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.709724,0.704226,-0.018916 176.083374 center 0,0,0 model #1
move 188.542476,197.934509,184.188836 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!