Pairwise fitting pdb-4v4v on emdb-1417 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1417 by gmfit(PID:660043).





RANK[1] Corr.Coeff:0.868

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1417)

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Cryo-EM study of the spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.868
0.715
0.713
0.703
0.698
0.694
0.690
0.685
0.680
0.676







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1417.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.035677,-0.961035,-0.274114 2.906626 center 0,0,0 model #1
move 14.121186,0.796765,0.847735 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!