Pairwise fitting pdb-4v4v on emdb-1005 by gmfit










Pairwise fitting of target pdb-4v4v on reference emdb-1005 by gmfit(PID:4134948).





RANK[1] Corr.Coeff:0.649

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v4v)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v4v)]







REFERENCE(emdb-1005)

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Structure of the Escherichia coli ribosomal termination complex with release factor 2. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.649
0.554
0.550
0.547
0.546
0.544
0.534
0.533
0.531
0.518







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1005.map.gz", and read it.

  2.  Download the Target molecule "4v4v"(PDB-format) or
  "4v4v"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.606529,-0.494309,0.622721 165.705631 center 0,0,0 model #1
move -4.968166,6.161855,-9.768834 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1005)]

[Download the target GMM(pdb 4v4v)]

[Download gmfit result file(4134948)]