Pairwise fitting pdb-4v4v on emdb-1005 by gmfit



Pairwise fitting of target pdb-4v4v on reference emdb-1005 by gmfit(PID:4090016).

RANK[1] Corr.Coeff:0.649 [JSmol] [Molmil]
TARGET(pdb-4v4v)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v4v)]
REFERENCE(emdb-1005)
display:
color:
Structure of the Escherichia coli ribosomal termination complex with release factor 2. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.649 0.554 0.550 0.547 0.546 0.544 0.534 0.533 0.531 0.518

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1005.map.gz", and read it.
  2. Download the Target molecule "4v4v"(PDB-format) or "4v4v"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn -0.606529,-0.494309,0.622721 165.705631 center 0,0,0 model #1
    move -4.968166,6.161855,-9.768834 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1005)] [Download the target GMM(pdb 4v4v)] [Download gmfit result file(4090016)]