Pairwise fitting pdb-4v47 on emdb-3228 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-3228 by gmfit(PID:646136).





RANK[1] Corr.Coeff:0.892

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-3228)

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color:


Sub-tomogram averaging in RELION [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.892
0.744
0.736
0.725
0.725
0.723
0.722
0.716
0.709
0.704







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_3228.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn -0.518476,0.066887,-0.852472 128.524593 center 0,0,0 model #1
move 218.049301,213.610565,215.805751 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!