Pairwise fitting pdb-4v47 on emdb-2008 by gmfit



Pairwise fitting of target pdb-4v47 on reference emdb-2008 by gmfit(PID:4101143).

RANK[1] Corr.Coeff:0.797 [JSmol] [Molmil]
TARGET(pdb-4v47)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v47)]
REFERENCE(emdb-2008)
display:
color:
3D reconstruction of a translating yeast 80S ribosome in complex with Dom34p and Rli1p [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.797 0.772 0.738 0.725 0.723 0.716 0.712 0.698 0.685 0.672

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_2008.map.gz", and read it.
  2. Download the Target molecule "4v47"(PDB-format) or "4v47"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.629389,0.726123,0.276794 140.202101 center 0,0,0 model #1
    move -2.200282,2.372075,-4.634808 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 2008)] [Download the target GMM(pdb 4v47)] [Download gmfit result file(4101143)]