Pairwise fitting pdb-4v47 on emdb-1780 by gmfit



Pairwise fitting of target pdb-4v47 on reference emdb-1780 by gmfit(PID:4097345).

RANK[1] Corr.Coeff:0.787 [JSmol] [Molmil]
TARGET(pdb-4v47)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v47)]
REFERENCE(emdb-1780)
display:
color:
High-resolution Cryo-EM structure of a programmed wheat germ ribosome [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.787 0.757 0.729 0.719 0.718 0.706 0.694 0.694 0.692 0.662

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1780.map.gz", and read it.
  2. Download the Target molecule "4v47"(PDB-format) or "4v47"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.593626,0.753395,0.282848 143.740883 center 0,0,0 model #1
    move -3.640234,5.535117,-7.997038 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1780)] [Download the target GMM(pdb 4v47)] [Download gmfit result file(4097345)]