Pairwise fitting pdb-4v47 on emdb-1668 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-1668 by gmfit(PID:1391609).





RANK[1] Corr.Coeff:0.779

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

display:



color:



 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-1668)

display:



color:


Cryo-EM structure of the active yeast 80S ribosome bearing a P-site tRNA and with the rRNA expansion segment ES27 in the exit conformation [Ngauss:20]



[Download the reference map]





Other Transformations
rank
1
2
3
4
5
6
7
8
9
10




Corr.Coeff.
0.779
0.727
0.711
0.708
0.704
0.699
0.692
0.690
0.683
0.660







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1668.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.618434,0.748051,0.240747 138.799095 center 0,0,0 model #1
move -2.500042,3.873346,-7.994557 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1668)]

[Download the target GMM(pdb 4v47)]

[Download gmfit result file(1391609)]