Pairwise fitting pdb-4v47 on emdb-1553 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-1553 by gmfit(PID:854846).





RANK[1] Corr.Coeff:0.895

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-1553)

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Pretranslocation ribosome. Group after ML3D classification. Racheted ribosome with tRNAs in hybrid positions. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.895
0.837
0.710
0.709
0.701
0.697
0.694
0.682
0.669
0.667







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1553.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.694236,0.719559,-0.016456 178.721366 center 0,0,0 model #1
move 0.078752,1.553672,-3.262195 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1553)]

[Download the target GMM(pdb 4v47)]

[Download gmfit result file(854846)]