Pairwise fitting pdb-4v47 on emdb-1553 by gmfit



Pairwise fitting of target pdb-4v47 on reference emdb-1553 by gmfit(PID:4127247).

RANK[1] Corr.Coeff:0.895 [JSmol] [Molmil]
TARGET(pdb-4v47)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v47)]
REFERENCE(emdb-1553)
display:
color:
Pretranslocation ribosome. Group after ML3D classification. Racheted ribosome with tRNAs in hybrid positions. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.895 0.837 0.710 0.709 0.701 0.697 0.694 0.682 0.669 0.667

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1553.map.gz", and read it.
  2. Download the Target molecule "4v47"(PDB-format) or "4v47"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.694236,0.719559,-0.016456 178.721366 center 0,0,0 model #1
    move 0.078752,1.553672,-3.262195 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1553)] [Download the target GMM(pdb 4v47)] [Download gmfit result file(4127247)]