Pairwise fitting pdb-4v47 on emdb-1312 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-1312 by gmfit(PID:4088980).





RANK[1] Corr.Coeff:0.916

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-1312)

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Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.916
0.912
0.726
0.711
0.699
0.687
0.678
0.675
0.674
0.654







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1312.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.060930,-0.982744,-0.174647 2.622098 center 0,0,0 model #1
move 9.331717,-2.552142,6.551734 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1312)]

[Download the target GMM(pdb 4v47)]

[Download gmfit result file(4088980)]