Pairwise fitting pdb-4v47 on emdb-1217 by gmfit










Pairwise fitting of target pdb-4v47 on reference emdb-1217 by gmfit(PID:4095101).





RANK[1] Corr.Coeff:0.808

[JSmol]
[Molmil]






  

      
        
      
    








TARGET(pdb-4v47)

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 [Ngauss:20]

[Download superimposed target atoms (PDB)(pdb-4v47)]







REFERENCE(emdb-1217)

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Signal recognition particle receptor exposes the ribosomal translocon binding site. [Ngauss:20]



[Download the reference map]





Other Transformations
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Corr.Coeff.
0.808
0.748
0.743
0.739
0.719
0.710
0.706
0.700
0.687
0.686







Procedures to view this superposition in your local computer by "UCSF Chimera".

    

  1.  Download the Reference map "emd_1217.map.gz", and read it.

  2.  Download the Target molecule "4v47"(PDB-format) or
  "4v47"(mmCIF-format), and read it.

  3.  Copy following two command lines into a file 'transf.com'.

    turn 0.036921,0.123136,0.991703 171.826664 center 0,0,0 model #1
move 0.909708,6.858381,-3.615727 model #1

    

  4.  Open 'transf.com' to execute it.

    
 * Don't move the map/molecule by your mouse until the step 4 have been finished !!




[Download the reference GMM(emdb 1217)]

[Download the target GMM(pdb 4v47)]

[Download gmfit result file(4095101)]