Pairwise fitting pdb-4v47 on emdb-1217 by gmfit



Pairwise fitting of target pdb-4v47 on reference emdb-1217 by gmfit(PID:4095101).

RANK[1] Corr.Coeff:0.808 [JSmol] [Molmil]
TARGET(pdb-4v47)
display:
color:
[Ngauss:20]
[Download superimposed target atoms (PDB)(pdb-4v47)]
REFERENCE(emdb-1217)
display:
color:
Signal recognition particle receptor exposes the ribosomal translocon binding site. [Ngauss:20]
[Download the reference map]
Other Transformations rank 1 2 3 4 5 6 7 8 9 10
Corr.Coeff. 0.808 0.748 0.743 0.739 0.719 0.710 0.706 0.700 0.687 0.686

Procedures to view this superposition in your local computer by "UCSF Chimera".

  1. Download the Reference map "emd_1217.map.gz", and read it.
  2. Download the Target molecule "4v47"(PDB-format) or "4v47"(mmCIF-format), and read it.
  3. Copy following two command lines into a file 'transf.com'.
    turn 0.036921,0.123136,0.991703 171.826664 center 0,0,0 model #1
    move 0.909708,6.858381,-3.615727 model #1
    
  4. Open 'transf.com' to execute it.

    * Don't move the map/molecule by your mouse until the step 4 have been finished !!

[Download the reference GMM(emdb 1217)] [Download the target GMM(pdb 4v47)] [Download gmfit result file(4095101)]